NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007854_10000384

Scaffold Ga0007854_10000384


Overview

Basic Information
Taxon OID3300004806 Open in IMG/M
Scaffold IDGa0007854_10000384 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28774
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (52.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F001774Metagenome / Metatranscriptome636Y
F078045Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0007854_1000038411F001774AGGAGMALKLKLESTQFGVPAPEAYARITNFFGTKDNIQVQVAIHYDQAAREQNLATVREDAHYIAVESLKGDIIPAIYEVLKTFSQYEGAVDC*
Ga0007854_100003842F078045AGGMSYAHFVNNYQRYLKSPNTLSEANKDAYYCSAITYPKEPDHGGLIGFLVALLFVGIFGYGFWVYLGV*
Ga0007854_1000038420F000934AGGMANLTTILSIAEQVTINDQRFVGQTISRNQRITTSEIITVVPFQFEFKPNDYLLYSQNRQLLANLRQYDKSLTQYLNFGSTGWVNYINYQGQLTPTQIAGCTFSTSSAAKNLILSGVPTANPTYYVVRAGDFIQAGQYTYIATADVVCGSSGTVTIPVHRNLIDGPLTSGITAVMGQYGTTQAMGGNTYTGVTFPIILQNYPTYTLIPMTNDSFIKWSGQFKAFEAVL*
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