NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007794_10004813

Scaffold Ga0007794_10004813


Overview

Basic Information
Taxon OID3300004774 Open in IMG/M
Scaffold IDGa0007794_10004813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4109
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032141Metagenome180Y
F041596Metagenome / Metatranscriptome159Y
F091245Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0007794_100048133F041596AGGAMNKATPAPEANIWDDVPKETPKKETVRKTDKVVAKPAAVVTTVPQTPDYDLEGLQTDFPTATDLERFVFDETGVVLSLKGRANKMKYQVAMDVLNGQPVDPKFIGEGNPYLDKADMVPEEPMKELPPRPAEIPPLTEVQNEFFTAFVPHSDPEYHARGVRMHCTFRKYRNGCITYEVLGPIEPKPFGEKIDKFGRMRPEIIRWTDPRTGEQIVQREDGTLTPVGRRLKAMMQTMKYNDSNQWVRYIDRDFISLDQRAAANPWDLES*
Ga0007794_100048134F032141AGGAMARISTTNMQAKSINQKRGPTTGNENPGTKRADFMAEKSRTGSEKSELANMITGAVAARGRGMEGFRDKAVEGLHTNTNVGRGPTRGNAGRPQKSGGGRKGALGATSGY*
Ga0007794_100048138F091245N/AMTTEKISIKPARKKAPSRGGARPGSGRPKGSGTKVKLEDLMLNIELETGRTYGELLAHNYALAIGRSDWNGVRDYDKAFMNKMLADKSEVVTVETDDVVAQKQRAFAEAIAQIAGIAKST
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