NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007791_10046694

Scaffold Ga0007791_10046694


Overview

Basic Information
Taxon OID3300004772 Open in IMG/M
Scaffold IDGa0007791_10046694 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1418
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029327Metagenome188Y
F037029Metagenome168Y
F056283Metagenome / Metatranscriptome137Y
F074332Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0007791_100466941F037029GGAGVKHSFRRWCQEKWFEHKDELESYGQPLDHTAQQYFEKYKFWLKREYRHQLLES*
Ga0007791_100466943F029327GGAGMGFYKNIEIEIQEWQARGCGIEETYIYFKDYATYEDVVRIFAKETV*
Ga0007791_100466944F074332AGGAGMTQNHLAQYNIEELQGYFSDFHKDFYGFRPRTLGSAEDWNNREWLEAQINRIHDTMDAMKKTYSGREELRIAGWIIDEAEFNDIVDPEEYARWSADADAQAYGEMQ*
Ga0007791_100466945F056283AGGAGMFETLVDQLVKVTLTNEPVKTEFYNGTLFVRKITEPQARQVFHRLSKQFGLGTVQVSPIGDTGEYAFDFVAKKQQEESEDFSPFATVNS*
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Institute for Fundamental Biomedical Research
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