NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068925_1016746

Scaffold Ga0068925_1016746


Overview

Basic Information
Taxon OID3300004611 Open in IMG/M
Scaffold IDGa0068925_1016746 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001346Metagenome / Metatranscriptome718Y
F026580Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0068925_10167461F001346AGGAVKTLRRVGDVKNGTADLWTKGNLRVKRRDPWHRANARPKAAADPALSGEDADKQSQTCLDLVRKPVAQPPVQAS*
Ga0068925_10167462F026580GAGMRNRSNSSQVARAGFEPERIAVTQRVFGCYCASARTGGSGGLRKEVSQMKDAERRDKLSVRTGKDTRPRQDP*

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