NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068958_1322347

Scaffold Ga0068958_1322347


Overview

Basic Information
Taxon OID3300004609 Open in IMG/M
Scaffold IDGa0068958_1322347 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010968Metagenome / Metatranscriptome296Y
F014283Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0068958_13223471F010968N/APRNPKTLETFNKVTSLLPDGGHGLIYLTNNEGLWILRYNRPARLEPAKKKQPCDSESAIMAMPPDCD*
Ga0068958_13223472F014283N/ASKGEITVQGCVGRSGGDYVLTKQDPAMTYELQATGKIRLRKYLGQRVEVTGTESPSMMTSSDALTRTGAPSSVTLTITSIKTIEKECPVR*

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