NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069718_16342784

Scaffold Ga0069718_16342784


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_16342784 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7512
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032541Metagenome / Metatranscriptome179Y
F061656Metagenome / Metatranscriptome131Y
F061834Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0069718_163427842F061834N/AMVLKKELRKTLNNYLKGSVQVKERDMAREVIEKKLFIENIILLREIEDRRDFMEEELGLDMSIYEEKFLQIIENLFKIHFSKEQFALIQYYIYQVPTLDNWDGKIDLSDGKDMITVDFETPEQVWNVITSIKEVKK*
Ga0069718_163427843F061656AGGAMAKFCFYSKNNPTQEPVGVVDALSKEEAIKFFSLSKALPVNDFLTIFEVKSYTYGAQEGIKENAKQLLKG*
Ga0069718_163427844F032541N/AMNLVNEIKQILSEVTKVNFKGHKFVLKIDVNEDPNKKGVKVQFLPTTFTGMSKKEQDDIAMELGAKLNQGLSALGLAVERDRELKDKTIIGFFIYIEYLNKIIINALNQAAKGQQ*
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