NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069718_15252291

Scaffold Ga0069718_15252291


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_15252291 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4793
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033702Metagenome / Metatranscriptome176Y
F061600Metagenome131Y
F085178Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0069718_1525229111F033702N/AMKYCKVCQKEIPAKRVALGYKDTCVEHSNAFKYVGFVAGTNKVDYEISIVRDPETAMHMQKLTESRGAF*
Ga0069718_152522913F085178N/AMNKRHIPKAFFEPLEDIHSSDLLENEPLLDMIQKETPLAIEEAFKAKKTFATLFEVNGMDLYLDIPKQYWIPALETCIRFMIEKEDFEKCIPLRNLIEELQKPIKRIPKRKTNGTVAERDTDSN*
Ga0069718_152522914F061600N/AMEQSLNEIQIAINQILNVKSLIRRKKKTKEAKKRELFISIINSIEAIINRQNLMYAELNLDLAKYDESFLDTIDALIILHFGKEGAELIAYFLWDRVAPDGSISPLIDVDNKEVYLETASDLWNLLISINPAYGD*
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