NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069718_10100337

Scaffold Ga0069718_10100337


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_10100337 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2586
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002038Metagenome / Metatranscriptome600Y
F015597Metagenome253Y
F098917Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0069718_101003372F015597N/AMSDPKDFNPFDPISAAMGAMHGQNLLAAKDARIRQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG*
Ga0069718_101003374F002038AGGAGMSEVPKGIATIAKTVPRQFALLLLLDGYPYVEMTARKSADFMTDLNAWKRKTYPSLARSNVRFFTLAPTGEVKELTFTK*
Ga0069718_101003375F098917N/AMTNREYLRNVLTQLAGEVAALRPTPEPRFYSDDLQSLQAAIDAAAAELERLDAENIEEAYHIKPVYDRIKAVIAHERVLRNQLDRVALAADNALDLCNLLSAHVEEHNPNEDDAAL*
Ga0069718_101003377F001338N/AMEPNNDRKPLKSIETAGTYKLKLIKPAFDKVKVWEDGTVSCRLFFLDDQGNCLSKSYSSKWAKPLAMLVGKFSGKFTEELRLDATPAEFMTYCEPAFGKTCLVGVEATPSGEYNGKPQYKYKLTFPKGGQKPVVSEPLP
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