NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069718_10086053

Scaffold Ga0069718_10086053


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_10086053 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8809
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F006622Metagenome368Y
F008183Metagenome / Metatranscriptome337Y
F009393Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0069718_100860535F009393AGGAGMSTNSQIAFSPLGKTIVVAADATAPAGIKATVYEKFDPQNAGQYRFVNAGTNTVFLGTGPTAALAQAAAVAPTAGSPTAAIVLLPGAIEILRFNIDTFFSGLASGATTVYVTPGQGL*
Ga0069718_100860536F008183AGGMLGTDVMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMTIVSGVSAIVGYLLNYWKH*
Ga0069718_100860538F006622AGGVNEYQKQFDQFLKIFVRLCVVCWVLGLLRFLPDKLADKVVNKLLGMIGL*
Ga0069718_100860539F000220GGAMSDEKPSDILSKVLSYVDSPFKLFALILMAVFAFAGYFVWQNQALLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLHRAYTKEGRDKANDGLDVGLFTHNMANNADVVKLMASEIPCGEYRAAQSEMGLWYIAKGVTYTCRISIPPDPNRFVGQITVGWDNEPADIQVARTMMEIASTMLSRSKQ*
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