NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0069718_10013934

Scaffold Ga0069718_10013934


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_10013934 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6315
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F001881Metagenome / Metatranscriptome622Y
F044304Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0069718_1001393411F001881GAGMSERTQEFMNAVWEARNAGADTEEKLVAAILKTAAETVRFYQAQNDIIVLDKNDMLQLAQELEQ*
Ga0069718_1001393417F044304AGCAGMTTLNLTDRQVSIISIAITNLYDEIAKSGEGGAMRDDIMELSKYIQNQCNEAQQ*
Ga0069718_1001393418F000919GAGGMRFRDIEFRWCKINNKYELVKWNNPPHENTCYVLAFFDETKEGYDLRTVGDRFFEDKDAFIVGKHAIEFLNAMFYELQREKELE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.