NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062592_100994045

Scaffold Ga0062592_100994045


Overview

Basic Information
Taxon OID3300004480 Open in IMG/M
Scaffold IDGa0062592_100994045 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F002111Metagenome / Metatranscriptome592Y

Sequences

Protein IDFamilyRBSSequence
Ga0062592_1009940451F001935N/AVYTQHLSSLEFFTYAAFLVVVVLSIAAVLPGRKPPIRTEPYPDEDLKAHDRRLPKYFIAGGAFLVLGSVHMVAKNLPWAAEW
Ga0062592_1009940452F000280AGAAGGMAQDPERPRPARPLFGYRDVGEDVRHTRSAMTRAWIILAILIVLYLAWTLIVYFLEPGLR
Ga0062592_1009940453F002111N/AVLMAAISVLPFVSYSSMTESLVPAAQWPLVYSSLQALKGHVQEYPGCQGFDVFVRAEAGGDVLVHCYTTWDTPGQLEVFLERGYTFERMLADVGSGLDPRRSLVIEKVF*
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