Scaffold Ga0066223

Basic Information
Taxon OID	3300004461 Open in IMG/M
Scaffold ID	Ga0066223_1023764 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004461 Open in IMG/M

Scaffold ID

Ga0066223_1023764 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4119
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4119

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006266	Metagenome / Metatranscriptome	377	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10237642	F003521	AGGA	MKSLVLNIRNFFNRRTRVEDSRKEANVNRRTLVIENGESASRLMRNEDFALLFNLYRFNLLERLEDCRTDPERIDNAHDVAGVRDFIAFVEKTEYLGKVAIKTNT*
Ga0066223_10237643	F004695	AGGA	MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVRNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEEDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDALLHKNGIVMVSPVRDPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVDLAGAAQEAMAPEQQDNASPQENINDAINAHTIYRAQYKMTGFSTSVRIKHVAQHYFVCNPTISNIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDNDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSSKHVFEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYSDDYNIQQLANVCAKGKPFMDAISMDNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQAFAQSMMQLDPSVPELFAKVRRPYEDTLRVLGVKDVDSYLPTLEEAAKIFQAKSQQPPSPEHEETNSRTALNKAKTDETVAKTMFTQKKAEDVDTDNMFEALAAKRGKLSAVEID*
Ga0066223_10237644	F006266	N/A	PDEYVHYLLDKDTRNVPIALPHDAATAGRYTLTEQSVREVFEDSYGLNCIPGAILNPVNAQGKVTNHKAYGINIMRMGMERGTFRINESCIAFLDEARNYAIDDAGRFSDPDDHIDSARIGILALIQGHGESLVSRANTFQYRRLEAPEGKVQRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066223_1023764

Overview

Ecosystem & Geography

Associated Families

Sequences