NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066222_1258765

Scaffold Ga0066222_1258765


Overview

Basic Information
Taxon OID3300004460 Open in IMG/M
Scaffold IDGa0066222_1258765 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002598Metagenome / Metatranscriptome544Y
F006744Metagenome / Metatranscriptome365Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0066222_12587651F017995GGAMSKMKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCSCIDEISDELTLDWVNE*
Ga0066222_12587652F006744AGGAGMNLDEFKKHVLATRQASKAQALSVLSATITTQPNERENLK*
Ga0066222_12587653F000447GGAMGYIEIFRINEDGAGWVDLSEATPDELFQIEIGLLNEGAFE*
Ga0066222_12587654F002598AGAAGGMATKLYTIESLLVGKTYRSNSRHFSGEIVSAEPRPEIWYGEKTEAFLIEVNAGGLRNKFATIAGKVGE*
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