NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1103844

Scaffold Ga0066224_1103844


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1103844 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2774
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RIFCSPLOWO2_02_58_13(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012723Metagenome278Y
F101912Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0066224_11038444F012723GAGGMYTMTNDDIKAYFDSSNITLAELSVITGKTVKQLKTILMGK*
Ga0066224_11038445F101912AGTAGGMQALAIFKNKELAPVSYIANIRGRGIKHIQTLAYRFADNNGFNYTHITYYKHRDEYSTIAAKQSTPYYKEV*

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