NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1012896

Scaffold Ga0066224_1012896


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1012896 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2681
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F005720Metagenome / Metatranscriptome392Y
F049044Metagenome / Metatranscriptome147N
F051469Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0066224_10128961F002093AGGAGGMAYDTTIPAGGPGNFSTPNAAHSADGVEVKFITIDYINTMAAEITHQHASAAATAGLNLSMEAIQNQGVNILGKGALGNSNTEQTYMVRADALDTISSTTTLAAIEAAIKALNALTPDIVTATISSATANDEDMSDTAV*
Ga0066224_10128962F049044AGGAGMATKNNFSLNQNYELQGVDVTLLTVDFIVDVSAEVGDLTSGSTVAGLDMTRHAFAHQGLQILAEGPLVDSDTQKTYMVRTDNLDSLSSTTTIAALQAYIRTLDQSSSSFPGVTADLTGATVTETKIGILTANAVA*
Ga0066224_10128963F005720AGGAGMATSNATANMCRRQAFTGKGITFIEMMFDDEMVTTSTTPDTKDSVFNEMSKLVGTFGTIIAQSYALGCKATEKDAALATSIIEDELCDFYTFAVEGTPGQFNAADSAGDVNADPDQANASDPGVIADAEADIEVEILARISENDSTGGVHVDVRYLPADGVTSAGAEVVYGFNSARVNA*
Ga0066224_10128964F051469AGGAGMIEKFTVEIEVGDRVEVGRMHLANQTIKAIEVDKWGHPVMVLESGRRRGLFNMRLKKLIPEDVKRVQQPSEVMMTKEQWAEAQKKIDEANAE*
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