NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1008808

Scaffold Ga0066224_1008808


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1008808 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6065
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F005087Metagenome / Metatranscriptome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0066224_10088084F000857AGGAGMELNLNNEEAKVNEDYYTKGILEGGIEGALIKNDKMFNEVKSGTWSQTFKTTNIDYKVGALDGARYVQYEQKNVEAIRQGCKDRREFYKEHGTDNPFFAGTFHAMELPKCFAHEISSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPSIPTK*
Ga0066224_10088085F005087AGGAMALFIQSANSLVSRVAQWVGAIPSSISINASSYVSATGVITTSADPTSALIVGDFIGNSAIGPFTPVIAISSTTITVSDPDGVWSGATLPTPILKLPTQSSIEVLQCVQLCELKMRTAELPSLRSNPYGDDGDFVLTDDNGMADIPRDMNWPILFFQDTPSSEVVPGTPAASLGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQKYVFTPNPGKGVKIRAYYQKIFPFLYSATGDTLNPIVQNNAALASFPEGYLYGTLEAYYDKNKNTAEAQKWAARFEDAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR*
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