NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1069611

Scaffold Ga0065861_1069611


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1069611 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3985
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F031403Metagenome / Metatranscriptome182Y
F040590Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10696115F040590N/AMSGYGTIISGGARMTKGLTKGINDKLEEYAESHKMSAVLANSVRNVFNQNPLSDPHLNNINVKAAKKFTTPKLPAKI*
Ga0065861_10696116F001059AGGMAYDIEALKADLPTAKELAQFVYDKTQISLDLVGKPKEDQYQVAKNALEGKKIPSDYMTDLNPYLDKKELIPEDNIKQLPPRSADLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVMGPLEKTAVGKRINKFGQEQPEKYTWLDPRTAETMLRRADGTYTEKGRGLYAYCSGEKGGGIWPLIDRDLTNFTQKNVTDPWA*
Ga0065861_10696117F006264GGAMEDLTSLFRQKLPAQAEVCARKALERLQKDLQHEHLLSPQDVYYLASAAQILLDIRDLYGKK*
Ga0065861_10696119F031403N/AMLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIPVSNSTEPIRGIDYIQPIVTPGIDYATAIITKCLMPNGKVNFEFERFSEDGQQTSPSSHRNG*
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