| Basic Information | |
|---|---|
| Taxon OID | 3300004448 Open in IMG/M |
| Scaffold ID | Ga0065861_1052154 Open in IMG/M |
| Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Yale University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3539 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Newfoundland, Canada | |||||||
| Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005584 | Metagenome | 395 | Y |
| F009142 | Metagenome | 322 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0065861_10521542 | F009142 | N/A | MTNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAITIDYSDTAAKISQEAFDAEYCSIFEAFYSETPSLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSEADDGLRFLDFHEKRNSMYVAVI* |
| Ga0065861_10521544 | F005584 | AGG | MAGTISTSYFATDLTYMIQDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |