NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1038723

Scaffold Ga0065861_1038723


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1038723 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6325
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium RIFOXYA12_FULL_48_11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F010449Metagenome / Metatranscriptome303N

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10387233F010449N/AMSEDQVWNMEIRLARMEERQLQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN*
Ga0065861_10387237F000635N/AMTLSEIAQFAGEKVGKTDSDTLTFLQKSASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVSYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQTALDDELRLPHVHHLVLALTHADALERERQYAKAQSITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA*
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