NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1031216

Scaffold Ga0065861_1031216


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1031216 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5991
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017486Metagenome / Metatranscriptome240N
F049548Metagenome146Y
F060810Metagenome132N
F091751Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10312161F060810GGAGGMSIKVGLPDVTFNALCKLTEIDREFIGSPDYMGVAQFWSWSHPQKTRLSRASVSARRKIHHALVKDGLDLDGDTGIHRSIISIALEKEEQGL*
Ga0065861_10312162F049548AGGAGMNERQKQIAECTEDFLAALPNNMKGIDLGAIVCTIFEAFDLDYEERAQICEGVLNVMREVEMRRDERASQAADDVIARAAAKARK*
Ga0065861_10312164F017486AGGAMNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEIHAVLVPNYQDKSDKGTPWQAVKLQRDSEVCEKAIIDNSQTLNNEALDAEIMRYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQKRPTMILWAAAAKTFIEVV*
Ga0065861_10312168F091751GGAMSEMFYATPNQMYRINKLTHLLSGASGSPSASLPISKSDADALIKDMIKAEKLMSNSDTEEPKKVKRLKKAKPNRDDEIKVIKISI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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