| Basic Information | |
|---|---|
| Taxon OID | 3300004448 Open in IMG/M |
| Scaffold ID | Ga0065861_1012435 Open in IMG/M |
| Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Yale University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2930 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Newfoundland, Canada | |||||||
| Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023293 | Metagenome | 210 | Y |
| F032573 | Metagenome | 179 | Y |
| F057197 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0065861_10124354 | F057197 | GAGG | MANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKSAINAYRDLLRRDTLGFLKASHPAETEKTGE* |
| Ga0065861_10124356 | F023293 | AGGGGG | MRYGILDDEGNVVRWVWHMPPYPHIVQKIKRQRRPPLDLSNVPDALF* |
| Ga0065861_10124358 | F032573 | N/A | MKNKMSEAWREWWLIAHGKNTPAGSYNPLEAHMYEAWVAAWDAADKQSQSEITYLKEQLMRANTNDGAYKAAFLAGQMTARGGSWK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |