NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1003822

Scaffold Ga0065861_1003822


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1003822 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23252
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004420Metagenome / Metatranscriptome439Y
F023999Metagenome208N
F043148Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_100382211F004420N/AMYKEAFEDEGGKKVLSDLEARCNYRASSYVPGDANATAFEEGKRAVILHIHNMMKEE*
Ga0065861_100382213F043148N/AMDELDRLNVRLDCLRIAVEFGSQRDVMNPNALAENYYEWVMQGSEATRPGDNRKDDGPKSAKKTRSVRDTGSTPQSSNVNV*
Ga0065861_10038227F023999GAGGMTKLTRQRTDIILSSIADGHSIVDVCEATGVSRTAFYQRCKKDEEFAAAVKEAQQYSAEKALEELDTLYGDALHGRKDYNPNVLRDYAHHVRWKVGKVLPEKFGEAKNRAGVEVSDGTVRILWESDSGTTS*
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