Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1002073 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1002073 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20985
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (83.72%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

20985

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (83.72%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F005590	Metagenome / Metatranscriptome	395	N
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F018082	Metagenome / Metatranscriptome	237	N
F020173	Metagenome	225	N
F025969	Metagenome / Metatranscriptome	199	N
F027482	Metagenome	194	N
F064617	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100207318	F027482	AGG	VNKKGLEKWLDRMFAEGKAVTYPCGHFVGREWGRSFDEKLASCSTLAELEGFANRRRFDPSLPRWTATERAEILKRKIKLEKGKRK*
Ga0065861_100207325	F020173	GGA	MICTTCDGTGFIELPRFVDTPDSDAWTTVRCPECQDEDDFDWRNEEEEE*
Ga0065861_100207330	F005843	AGGAG	MTLAEPVFMAFAVFSSVDECEAFAKYYDLARIFEPQCVEMGGEAEYRRPWPDVRPQPRPTQENNNG*
Ga0065861_100207331	F009460	AGGAG	MAKWDISKLENSASVGAYIDEDDSTPTQPTPQMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLERRL*
Ga0065861_100207333	F005590	GGAG	MTENMTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEVLRKEIKRCLSKHGELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAF*
Ga0065861_100207339	F000256	N/A	MADGVSGIGSAPFNVQSDIHQQTQSRERIEAHLVEQRVAKEHRANHTHLDALREQKLDLGKAYDRFGTKTTADRPQGTNINIEV*
Ga0065861_100207343	F018082	N/A	VIDMKKVTVVGHKVHTSIGKLVKGDNAELPDAEVETLMRVRPDALIVTGDVEPAPAPAPTKRAKKK*
Ga0065861_10020736	F064617	AGAAG	MADKFLDFIDMIDGGGAGKFGKEFEGGGIFSMLANALATPYGSEDDERKRRVRQMRGLLAPDESIAPKAAPRPTVTRGGGTGRTQVRPQASPAQNMPFGSTPVGGGMPAAPSMTFGNIPVGGGMPAAAQNMARPEMPASGMPQAARAALQGPSPQAGMPTVMTDDDAFRIMVSQLGQTAVDRMSGQQFIQTLNQIKSQGRGM*
Ga0065861_10020738	F025969	AGAAG	MWTALLLLCSVERGCFAFGSPVMQSESQCIQSIPSGLEYARQMFPAYRATDYKCVQWGEGA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1002073

Overview

Ecosystem & Geography

Associated Families

Sequences