NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1000700

Scaffold Ga0065861_1000700


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1000700 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8146
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (51.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F003365Metagenome / Metatranscriptome491Y
F005537Metagenome / Metatranscriptome397Y
F008307Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10007002F003365AGGMKTIGKEWTKKEEGGTFTADHLSPSQLNKSLDMWFNDYVVLTAEQRKSLFGNLNMDIGAIVGQAVQDLIVHKLTFEEVMKGKK*
Ga0065861_10007005F002495GGAGGMSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGDMNYPEAGGAKGLIGWINESGNILSGYKNEPRPKQPKAESKEIPF*
Ga0065861_10007007F005537AGGMSDNIKFINNLEKLLHEKEGDYGHFDHTAFVMGGMMEKYLSVHNNKPVKVPLKFFGLFMIFLKCWRIMQSKDYKKDSFDDINGYTELLRRLVINENKTKRT*
Ga0065861_10007009F008307AGCAGMVKVLKQSSLEISADVEEFFDGETIEEATKKAHYQIMPGELAKINITDNKFIKATIKVVGEEHDNESKQYSKIVPEAE*
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