Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1000060 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1000060 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5846
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5846

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (11.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F035317	Metagenome / Metatranscriptome	172	N
F051922	Metagenome / Metatranscriptome	143	N
F065800	Metagenome / Metatranscriptome	127	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N
F084839	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10000601	F065800	N/A	METKFIPTNPEELASFNSILKEFNTINDSAYVFTDSYDSNYDVYVGSESTADGYEIWIINVDNEGPIIGENVYYYEPRAYDIFNHIGGGWRDDLVVYTELGLDEIEEYMIGELCTNYDNYLNELEDAE*
Ga0065861_100006010	F035317	N/A	MTEMKLYMQRCEEMRKQAMAERHAEATDEFGFCSGTTYKEWKTKTGMKGVSRKGKTFSHTKLWDYRG*
Ga0065861_10000602	F051922	N/A	MKRLSLYERLNPDVKAKLIANQIDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPTDANTMLRGDSNLIQPQNEVI*
Ga0065861_10000603	F014147	N/A	MTTIKNTFEQQLREKFGVNVMSTAGTDSAILADGTHGTDYLSYHDTSLDWIFGVHPELQAFIDAHGWECEWENSEVLNLYPGHDWTGDFSEAQLVSHWNAMCDYITAPQDHIYANDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNSLLNYLDVPELEEYLIAHALI*
Ga0065861_10000605	F080086	N/A	MTNITAIEVSIEALEKECQAHDFRFMENPWRHRHWFNEYDRRAKIFTLLERLGHSSKAIEVYNTYAPDFAKRPLSSSYY*
Ga0065861_10000608	F070126	N/A	MRLYQLYTYCREVIEKYPELADEVMQHFALAEMECEDDASSEEHEVELSLTDINNAIAEYELQK*
Ga0065861_10000609	F084839	AGG	MNLPYKYVTVLDYSNGQVYLYDYDETKMPMFNAAKFVELRHGLDKVNYMVHQYKPALWTKDLYYCNREQAYQLTNENEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1000060

Overview

Ecosystem & Geography

Associated Families

Sequences