NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068932_1018269

Scaffold Ga0068932_1018269


Overview

Basic Information
Taxon OID3300004295 Open in IMG/M
Scaffold IDGa0068932_1018269 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)543
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008512Metagenome / Metatranscriptome332Y
F052605Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0068932_10182691F008512N/AVRTALAGLSKIETAQRKTPKGGQKERTHREDHGNSAGSVKNFQAPAMLKTTPLDCEIKSNLREKRRDPWFRANAPSKAVADL
Ga0068932_10182692F052605N/AAAESKIEVVRFRIIPGDWGKVRSGWLIWLLTNRSASSDEAEFTSSSGGVRTPSNANEGLGSKRRLETASS*

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