| Basic Information | |
|---|---|
| Taxon OID | 3300004240 Open in IMG/M |
| Scaffold ID | Ga0007787_10073738 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1561 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024060 | Metagenome | 207 | Y |
| F031871 | Metagenome / Metatranscriptome | 181 | Y |
| F042297 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0007787_100737381 | F042297 | AGGAG | MGFEKVVLDKVATVLKSDTQAEFFCGTLSVICNERDANKILIKLNRDYDNKVQMSPDGSYGYLFDFVA* |
| Ga0007787_100737382 | F024060 | AGGA | MTKQFVQVSAHKDSNNFAHCSNLSLMANQNLTAKQALRYLQVMADEYELNGYKIEWICEDFDAVYEEMYGELFA* |
| Ga0007787_100737384 | F031871 | AGGA | MKQTHTMYIYKTDRRTKTGERLVSTTVWQNRDAAEMKREVRELQYELWPVSKGYRIEFHPTMKTVRNLMTGADVQIDRDTPWSCN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |