Scaffold Ga0007787

Basic Information
Taxon OID	3300004240 Open in IMG/M
Scaffold ID	Ga0007787_10019815 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004240 Open in IMG/M

Scaffold ID

Ga0007787_10019815 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2813
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2813

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100198151	F000258	GGAGG	VTANYKLDAMLELRKYLWDQLASRNIFDENDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQIMLTLYSTSVSDINEIRNYLTDEFRRMDESAKDINKWSGLSDKFKFHTIWVADISPTAPSEELQGFFAAEVILEIKYSRITDGQGRFL*
Ga0007787_100198152	F001900	GGAG	LDNSAMLIQASSGLEGMMYANQNGPLKDSTVAQVSAFVYYEAAVIAKLTTNKAFQGAFTKIIFDQIDADFGAYIDALARTRPKSLHHVYEWKRTGNKSARLFKLNKISEQGLSFRMNYEFLPSRSMVPAPKGKRRHMFMNKAEVMEQGKPLVIRPKNSDRLVFEYNGETVFMPKGASVTVKRPGGSGARNQFSLAYSRFFSGRLVNESIKRSGFQKIFNSSMTKALAVPSNIKKVQYSFSPNTIRSQADAALTLSFGGAM*
Ga0007787_100198153	F001229	AGG	MNDLIDSVLSMSLDVYRQFETQDPDTGAIVREWTYYKTVPCHAKGVISNSATTRSSDKQIFSNKYTNDQIIQVRTSEKLTAREKVTNICDNEGNVIWNEINFPTETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0007787_100198154	F005054	AGG	MAEILIKTQSPITHQVFWNGDISTPDSLPVVKLYDITEDAAISPSIAPTTLLETLTPYIDENNPGTYGVNIPYQYTDRNRTLQLRWQYSMSGVAVTRTDEVYVVTPYVDFNHVQDLGFSTDSSDPNYKSYKELIRAERYARKQIEQYTGQSFYLYDDVVVVYGYDSDILPLPSKINTLHELYSQDILLLDTINNIDNWNYPVEITPTGYGIKINRANMLDNTVYTANGMVPPSINDYGNGVFRSGIAYRVQGRFGWEKVPDEVELAAIELMKDYFAKDTVWRNKYVKTISTFDWDFEFTSDANAGTGNAYADKLLSEYVLVTKVEII*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007787_10019815

Overview

Ecosystem & Geography

Associated Families

Sequences