NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0055584_100501182

Scaffold Ga0055584_100501182


Overview

Basic Information
Taxon OID3300004097 Open in IMG/M
Scaffold IDGa0055584_100501182 Open in IMG/M
Source Dataset NamePelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1263
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, North Sea, Atlantic Ocean
CoordinatesLat. (o)54.18194Long. (o)7.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F018906Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0055584_1005011822F012114AGGAGMSHNNCIMPEVRPNVWVVIDAQTGDKIGEVGAITESEARQLVSHHVLIPFRLSHIEE*
Ga0055584_1005011823F018906AGGAGMKTKCNPLKLNETRFLKRARKQDGRYVKRYFFSNGLGASVVCHDHSYGGHSGYFELALLKYSHGTDPEMTCEIIQNEHPIKEHHGVSDVWGWQDFHEVAAILQEIRNYNTGDYNYNAK*

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