Basic Information | |
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Taxon OID | 3300004016 Open in IMG/M |
Scaffold ID | Ga0058689_10002648 Open in IMG/M |
Source Dataset Name | Agave microbial communities from Guanajuato, Mexico - As.Ma.rz |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3149 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Guanajuato, Mexico | |||||||
Coordinates | Lat. (o) | 21.0936 | Long. (o) | -100.2988 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020517 | Metagenome | 223 | Y |
F079676 | Metagenome / Metatranscriptome | 115 | Y |
F081092 | Metagenome / Metatranscriptome | 114 | Y |
F091480 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0058689_100026483 | F079676 | GGAG | MSGETADPGAGIKAGDRVRALDGAYKGRVGTALRVVTSRDEGRTSQSILVSFPAGGADYLDAGAIEKAETSDE* |
Ga0058689_100026485 | F081092 | AGGCGG | LSGYDDFIERLESALADEEGREDFLEYLQGLTSEGRAEILAEADRREAEAEVA* |
Ga0058689_100026487 | F020517 | AGG | LSGQRPVSRDAKHYLVKRPNEIIPKRRSWNEVQAELRQKGTAADEAMLFRGIVTEDGTEYRDMYADSRTQVTEHTA* |
Ga0058689_100026488 | F091480 | AGG | MRDLHVYVEPAGSGAGGERATFYSRRADGPFYRWLYAEGAGRWRYSRVVLDRPTLRVLCLAPWDAVPAALRNRIGEHYLE* |
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