NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058689_10002648

Scaffold Ga0058689_10002648


Overview

Basic Information
Taxon OID3300004016 Open in IMG/M
Scaffold IDGa0058689_10002648 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.rz
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3149
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0058689_100026483F079676GGAGMSGETADPGAGIKAGDRVRALDGAYKGRVGTALRVVTSRDEGRTSQSILVSFPAGGADYLDAGAIEKAETSDE*
Ga0058689_100026485F081092AGGCGGLSGYDDFIERLESALADEEGREDFLEYLQGLTSEGRAEILAEADRREAEAEVA*
Ga0058689_100026487F020517AGGLSGQRPVSRDAKHYLVKRPNEIIPKRRSWNEVQAELRQKGTAADEAMLFRGIVTEDGTEYRDMYADSRTQVTEHTA*
Ga0058689_100026488F091480AGGMRDLHVYVEPAGSGAGGERATFYSRRADGPFYRWLYAEGAGRWRYSRVVLDRPTLRVLCLAPWDAVPAALRNRIGEHYLE*
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