NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063042_109634

Scaffold Ga0063042_109634


Overview

Basic Information
Taxon OID3300003981 Open in IMG/M
Scaffold IDGa0063042_109634 Open in IMG/M
Source Dataset NameDiffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2375
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Source Dataset Sampling Location
Location NameMid-Atlantic Ridge
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F013570Metagenome / Metatranscriptome270N
F044553Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0063042_1096341F013570GAGMELEKIKKKREELMTNYNSLVDKRIELEKQLEVTNTDILTMRGAILLSNEFIEEEEKPEPKPLFPEKEVVVNDLDKEKDGGQKNK*
Ga0063042_1096345F001334N/AMKFKEYLQLNADDSIEQIMNGEWISKSRTTWKATDDEDNTIEIHNDGHDPELNGESWAVHINTFAPKAFAFFCKQFIKEVKPSEVTHARTRIYPSTSN*
Ga0063042_1096346F044553GAGGMPEQESIHQLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKLLHSRIGDLHDKCTEMIDKTETRVSS
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