NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063391_1005971

Scaffold Ga0063391_1005971


Overview

Basic Information
Taxon OID3300003937 Open in IMG/M
Scaffold IDGa0063391_1005971 Open in IMG/M
Source Dataset NameSPOT_150m_metagenome_year
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Davis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37759
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (70.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location
Location NameSan Pedro Channel, Pacific
CoordinatesLat. (o)33.55Long. (o)-118.42Alt. (m)Depth (m)890
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007944Metagenome / Metatranscriptome342Y
F008913Metagenome / Metatranscriptome326Y
F025144Metagenome203Y
F046419Metagenome / Metatranscriptome151N
F074046Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0063391_100597158F008913N/AMLIFYPKLDNGNILWTCDNCGRTAEVSCADTNAVALVCHCDMNVHPRCNNDWYYKSLYWNRIPLENRERYRKGRSKQHERDTKE*
Ga0063391_100597172F025144N/AMNKKIKKVFKKLDPELQEAIKFLINDIQVKREIKKLEKNENKA*
Ga0063391_10059718F074046AGGAMSEYSGCDDFTPIRRSYKRAWFGEKLFVDTYGRAPNLSDVPMTYMTRSEAFKKRGLTRKEINKLWEKRAKGE*
Ga0063391_100597180F007944N/AMKMESWSGYEKYIVMLTSYNSSVTGVRMGYQAYLDFKKVREALVLISRANANDSYSYESNIYKRPITSSRASQILEKLEQCKWDEDIRVVAKQIKAGFMLSPSR*
Ga0063391_100597182F046419N/AMERYKNIADFVEAWGDFKDARVGGDTKAHWVNPSGKVYDVKDTHIIFVSEKPSLFKTTTEKMKKLYD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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