| Basic Information | |
|---|---|
| Taxon OID | 3300003937 Open in IMG/M |
| Scaffold ID | Ga0063391_1005536 Open in IMG/M |
| Source Dataset Name | SPOT_150m_metagenome_year |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of California, Davis |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47988 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (70.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | San Pedro Channel, Pacific | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.42 | Alt. (m) | Depth (m) | 890 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028309 | Metagenome | 192 | Y |
| F078572 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0063391_100553611 | F078572 | GGA | MRDAFVVRDQNGRKDMIPSQRERPMAMGDGTFMADNAFRESVPMMSYTPEELGINMAAYPMANESAVAIVSQDYQETGEMTSMTPEQQATVQRSSNPFLGVVQEDEYSGGVQFNAEGNMLETHAYTILKSILFVGIGVWVGKNWF* |
| Ga0063391_100553612 | F028309 | N/A | MLPPFTHDWRPGDRVVSIAVRESVAETGLGTIQRVLLDRAIILWDDGEQSEERLQDLIIAGFNPSKIVFSADEIFGHRNQKDWWTGSSVITEDVTSEVAINERIIINQMMISGIPLSIDNMKGISWGSFINENFKQGS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |