NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063391_1002211

Scaffold Ga0063391_1002211


Overview

Basic Information
Taxon OID3300003937 Open in IMG/M
Scaffold IDGa0063391_1002211 Open in IMG/M
Source Dataset NameSPOT_150m_metagenome_year
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Davis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41883
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (76.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location
Location NameSan Pedro Channel, Pacific
CoordinatesLat. (o)33.55Long. (o)-118.42Alt. (m)Depth (m)890
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023453Metagenome / Metatranscriptome210Y
F025145Metagenome / Metatranscriptome203Y
F038861Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0063391_100221162F038861N/AMTKWIKYKTSHEGVGTFVSVWLDEKEGLVKRIFDGDHCGDGVSRRKSKADILFRNEIYWLTHPELSKSKFLPELISIDEETKTIIQRYYGPNLLDYYPDNFPITNISEQILEMYEFFHKVGVNKINGALSNMSLNGDQVIAFDFKWARPAPKANANELKAFKQWLTKIDPELVEKLIKMKTS*
Ga0063391_100221165F023453AGAAGMRINEIAKPEVIYELEKWAKTQVPLLEGSMSAEKLSKTILQKAIAKFKKQPEPSEEKNQEMEDYMAQLEVMLNREEPTVEKSTLQKFFGFFRAHPRMIGLGVMILMLLSPILPQIAIIGLSLEKILSVILAGLYAIDIASPTVKTALEI*
Ga0063391_100221167F025145N/AMWYNSFTMNIKHKPQFNIEKVTAHYTKKDGVPVHYVCTSDLDESNKVLDIYYRDTPHPEYNNYYFGLYADEDDRMMICKADSIEKLNFGMISDSKKEWVYSRSHHDYVTTETGFIDGGRKYIRRGGDLETQDHIVCKVLNGEFVMGDEIE*
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