NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007872_1000232

Scaffold Ga0007872_1000232


Overview

Basic Information
Taxon OID3300003826 Open in IMG/M
Scaffold IDGa0007872_1000232 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jul08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10870
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010516Metagenome302Y
F021219Metagenome219N
F070722Metagenome122N
F071820Metagenome121N
F091105Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0007872_100023210F010516AGGMNPYAVWVPSNTGRYLLTFATLDEAYLFIIRFGGGLEVVPNTYENF*
Ga0007872_100023211F070722N/AMDNDLLKQALAHIGRIGGKSTSDKKRASSRLNAQKATEARLKRQKPVKGHRIAPNEHITD
Ga0007872_100023215F071820N/AMSRQRSKATNWASLLQNEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA*
Ga0007872_100023219F021219N/AMLRDEMKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNKPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVLEQEIEELEWQRYLREKRGHDKYYEEAPV*
Ga0007872_100023221F091105AGGAMIQQTGTLGHITAISPLGTSFESNYGTLYPHSIEFASGTKGTCNSKKPVSQYKPGDSVYFTVSEDKKTKANLIKILGTESYQAKAGIRAENYKQAEQIGFASASKPAYNPDGAALGNAKNIAKDIVIHNARVQNVILKPDELENGDFQEFVRIVLKTQ*
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