NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007875_1008787

Scaffold Ga0007875_1008787


Overview

Basic Information
Taxon OID3300003823 Open in IMG/M
Scaffold IDGa0007875_1008787 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1262
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009320Metagenome / Metatranscriptome319Y
F016785Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0007875_10087871F016785AGGAMLDQKNVVVINLASETGHRGIVEKVAHEVYVKMVDYLRLTQSKNTYNRFSDYHYLQIPVSNSTEPVRGIDYIAPIVTPGIDYATAVITKCLMPDGRVNFEFERLNENDQMGAEQAQEMVMHFLNDKNDAYAVVRDWAQDALLHKNGIVMVMPIREPITMYKEVTGTRDQLRSFEILTAEKGLESKRQNMRKVDVDMQGIMQEVMQPDETEDQQETPGQELNEAIKNNTIYRAKYKLTGYSTNIRVRHVAQHYFVCNPTIPRISDQDFIGFYEPMTIHEAKVLYPYID
Ga0007875_10087872F009320N/AATAGRYTLTEQSVREVFEDNYGLNCIPGAILNPANDQGKVTNHKSYGINIMRMGFERKTLMIHESCKKFLDECRNYAIDSHGKFSDPDDHIDSARIGILALIQGHGESMVSRANTFTAKRFAPLEGKIQRI*
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