NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0005853_1003034

Scaffold Ga0005853_1003034


Overview

Basic Information
Taxon OID3300003754 Open in IMG/M
Scaffold IDGa0005853_1003034 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1661
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Ontario, Canada
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033356Metagenome / Metatranscriptome177Y
F048763Metagenome / Metatranscriptome147N
F050791Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0005853_10030342F048763N/AMNYPPSQPIATFLQQRPPSTPQTDCFFTYNRISSQCKPVDRIADSIDPFELANNPNQIPSSNIAQDVHHSVNTLYDIQKSIFSSLTPTQTTLFTTYHNLLVSISRYLSQSENIPQPMPAPRIRYSPPPQ*
Ga0005853_10030343F033356N/AMTNQLTNNSSINPLQEDILPQEDQRPKTHLQLQYITQTNRLPFTEAHQEQYSANITINPFKLLELHNKLIVLEGQLSHLTDQVAAIVVEIHKMTHQN*
Ga0005853_10030344F050791N/AMTKTRSTTKQNNKPTTKSTEIKTIVIPKHLIELITFLHEANKIQFDLTKELLDRMKDDKSTNQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.