Scaffold LSCM4L_1030400

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold LSCM4L_1030400

Scaffold LSCM4L_1030400

Overview

Basic Information
Taxon OID	3300003668 Open in IMG/M
Scaffold ID	LSCM4L_1030400 Open in IMG/M
Source Dataset Name	Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Late Sample 5)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1043
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Source Dataset Sampling Location
Location Name	Lithgow
Coordinates	Lat. (^o)	-33.460524	Long. (^o)	150.168149	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064746	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
LSCM4L_10304002	F064746	AGGAG	MSKTILIALVILCAVMVCGCLDTAVVQKSVTIGGHTFTAALDDKWATSVQGEAVPYVPANLEDQYGIPDGAYDWTGLEDYGAFSYKSGQPSGSITKYGFVYIFILNPNEDLADSSSIDILRHAAYLIIDPGNHRNAVLGGDLTEKEIEYNGKEAYLVEVSGELKEDHINDNSYGAISFFLDNDTVALIGVHTTNNYGISAWDVIESITVT*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.