NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25930J51415_1002490

Scaffold JGI25930J51415_1002490


Overview

Basic Information
Taxon OID3300003499 Open in IMG/M
Scaffold IDJGI25930J51415_1002490 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4123
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024733Metagenome204Y
F050225Metagenome145N
F072117Metagenome121N

Sequences

Protein IDFamilyRBSSequence
JGI25930J51415_10024901F024733AGGMKYKAFDQALHDACDPPARDAVARWLRNLWYIDATPNPDKYAVDLILSRKGEHLGYAEVEVRDWEFCPFDTIHIAQRKDKLFNHPRTTMYVVNKPLTHAYWIRANKIKDCPLIEVPNRAVARDEYFYDVPKDLWKIVDLTE
JGI25930J51415_10024903F050225AGGAGMLQSERDAERFYEAQRKFEQRQRMIDKGWGDLEAYNALRASEKKKERIESIRMFLLGGLAAILFCVLFFGTNYLMHGYAI*
JGI25930J51415_10024908F072117AGGAGMSEIESQTNDLLQLQGELERIFDVLEGGTDLSKEQIDLLRYGCGFAPVNRQRNFLQGVFNDLNPYGRTI*
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