NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26238J51125_1000243

Scaffold JGI26238J51125_1000243


Overview

Basic Information
Taxon OID3300003478 Open in IMG/M
Scaffold IDJGI26238J51125_1000243 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20310
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010929Metagenome / Metatranscriptome297Y
F014087Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
JGI26238J51125_100024330F010929GAGGMKRTFKYKTITLRVEDCDEVVIDELKDAYHMNNRFDKVDCSNDVLEPDYELLKAILTVLAYYMPQEDYEEWVEINPMVKENA*
JGI26238J51125_100024331F014087N/AMPDMMDYYEEVLLLRKKVEKYETILKHAMSEKSGAFFICGEAGEKDTSGLPDKVFICPTYGLDGFQVYKKDGKYRMPGW*
JGI26238J51125_100024332F010929AGGAMKTITLQVEDVDQVIVDELKDAYLRNDKFDRVDCSDTVLEPDYELLKAIQTVLEYYMTAEEIELWNDYEKNNSHQS*
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