NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold draft_100628

Scaffold draft_100628


Overview

Basic Information
Taxon OID3300003437 Open in IMG/M
Scaffold IDdraft_100628 Open in IMG/M
Source Dataset NameMarine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11540
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (52.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location
Location NameSan Pedro Channel, Pacific
CoordinatesLat. (o)33.55Long. (o)-118.42Alt. (m)Depth (m)890
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F004643Metagenome / Metatranscriptome429Y
F006146Metagenome / Metatranscriptome380Y
F042386Metagenome / Metatranscriptome158N
F055786Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
draft_10062812F006146N/AMIITTTTMIIVQVIVVGCIMWTTPEPCPRKYRVTQDKGGELAHASDIFRYCTLDYGGKFILKEE*
draft_10062814F042386N/AMNNAGLTTRYEEGDNGQFELFKDNASYMKEDDRDGIPKFFTLEHIEKRLGGLGEY*
draft_10062819F055786GAGMICSNCYTSHIKPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKNRTWMDYKPVAIFGKKKKVEKKKTIEAITDKQFTDNL*
draft_10062820F001048N/AMKIKSKKQFWWRLNHLKRNGGEITITDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNVCGYKDIPTLAKAYGIK*
draft_1006285F004643N/ALVDLELARYYCKDFWEEEGWVSCFECDIIFYDLEKLYEHQLIHLREEVK*
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Institute for Fundamental Biomedical Research
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