NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25921J50272_10001454

Scaffold JGI25921J50272_10001454


Overview

Basic Information
Taxon OID3300003430 Open in IMG/M
Scaffold IDJGI25921J50272_10001454 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7985
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F022116Metagenome / Metatranscriptome216Y
F025689Metagenome200Y
F036198Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
JGI25921J50272_1000145412F025689N/AMEAQFHGAANAAQLRALHAAADWGGLLEYALLLAEQEASQRSQIHWLAQEASAALRTGLEQWHLDAAEELLRGRRREI*
JGI25921J50272_100014544F022116GGAGGMTEPFLTTDELAARWGLKPAAIKNQRARGIGPAYITAPRIGLPAGTPRVRYPLAQVLAFEEANGITPLN*
JGI25921J50272_100014546F010762AGGAGMNETTLDIAFKEWWEASYGRPPGTHAVMTHVAFAAHILELLELTQDDQPQN*
JGI25921J50272_100014547F036198GGAGMINHKTEQRRDDYLQWLYEQSGRTCCTYTGLYQQRIADLIRRDMAEALGDE*
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