Scaffold JGI25921J50272

Basic Information
Taxon OID	3300003430 Open in IMG/M
Scaffold ID	JGI25921J50272_10001157 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003430 Open in IMG/M

Scaffold ID

JGI25921J50272_10001157 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8804
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (25.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

8804

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (25.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F020342	Metagenome / Metatranscriptome	224	Y
F021097	Metagenome	220	Y
F059883	Metagenome	133	N
F074820	Metagenome	119	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100011571	F074820	N/A	MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFDPEEWAPALC
JGI25921J50272_1000115713	F059883	N/A	MGALMDQTEDNKRYHLIINVDEKYAIVNALAFYHAHHTMGALMDEDEREQYMLAFQEDGPIFVDSLATKVANTF*
JGI25921J50272_1000115718	F003687	GGAG	MTPKAVEQLLTQDARLLARRDSPAIDQEIEEQRQAALDLFFQWQDGLAQFQDLVPFCVILQHKVDLNRDLLRWERRHED*
JGI25921J50272_1000115719	F021097	N/A	MSNSFKDSCVALVIGIGSGLLLSTGVQKLLNQHYEEHCNARPNHNLVRTQGLLGDTYYCIHSKYL*
JGI25921J50272_100011572	F020342	N/A	MSAYVDYLNMFDRINLAACAKRRATDNLLDSTRWEGEYDTARLWMKYRLIKTTTYSYIDED*
JGI25921J50272_100011574	F001120	GGAGG	VTKKSHISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNANPNGVKGSVSIPGTGLSIPNIKLF*
JGI25921J50272_100011575	F001165	N/A	MTSSNTPRIPDSLDMQRLQAMQFVAKMKESAERHGIGFIGGFIAPNGEKFVMTNMDDDDAMALMPEDLK*
JGI25921J50272_100011576	F007026	N/A	MEQTKKYPELTWTKNEYHQLQLALDALKNIRNREDRRHQMDEHLDPHTRDVLDEVIGMLSDELDYDPTPSEPGEPPMTMDEMHTAAWKEHLAMHS*
JGI25921J50272_100011578	F091979	AGG	MRSEFVLMLIAGRYAVGGSPFLEGWKQEYMKAQGSMPPLEKVMDFLTSVIRNESIPIQNKQAEIRMLDQMRRFVPEVRSVVG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25921J50272_10001157

Overview

Ecosystem & Geography

Associated Families

Sequences