NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10012976

Scaffold JGI25922J50271_10012976


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10012976 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2205
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008235Metagenome / Metatranscriptome336N
F016959Metagenome / Metatranscriptome243N
F045698Metagenome / Metatranscriptome152N
F059897Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_100129761F059897N/AMRLYSKNNKDDLFDRFEIDINFPIFKCGTKPGNEWATDFPTKYIDIKFDTHLVYRKDVTWTYFELLFLGFGFTITKQTSY*
JGI25922J50271_100129763F045698N/AMNLPTKQPDVIDLTKSIRETHYQLQLDYQALMLKATTLQAENEELKERLAKIAEKIQLDI
JGI25922J50271_100129764F008235N/AMINYLKNLFKKKTEPETTPVEQPKNNYYLAKYRANVSLHITYNQLDTDGYHEYRQYENIESDDNAVFLEQKNKSIKVYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFVNAKIIIKDNDLYESTN*
JGI25922J50271_100129765F016959N/AVKPQWPTLKDRLQHPLKDELTALHQLKQVLPLSKQAQKLYDKLSKKSIQEKD*
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