NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26470J50227_1000470

Scaffold JGI26470J50227_1000470


Overview

Basic Information
Taxon OID3300003375 Open in IMG/M
Scaffold IDJGI26470J50227_1000470 Open in IMG/M
Source Dataset NameFreshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16627
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameTrout Bog Lake, Wisconsin, USA
CoordinatesLat. (o)46.0409Long. (o)-89.686Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008023Metagenome / Metatranscriptome340Y
F012098Metagenome / Metatranscriptome283Y
F016389Metagenome / Metatranscriptome247Y
F030064Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
JGI26470J50227_100047012F012098N/AMPKVHDIGPAFVQVTNFPYQWGKKLVVRGWTQEIEEPFRTAKPFIVRLPKYKALVFGKWTGATTEEAALNGALERRDVTYEDFTEEAGWTAPDSGGEESLEDFYARLSSMDGTLDVHDWQVYYHLAKESE*
JGI26470J50227_100047015F016389N/AMPLIRKFAVQGHAVPSVAHSPRGPFPPEVLAQPRMEVDDQHSDSLHVGLDNVRFFRCRACEEVLLEAELDNHDCEEINGYK*
JGI26470J50227_100047020F030064AGGAGVTTFFTTLGIVTGALISLGLLLKPLIGRLRRWAHWMESFMRDWEGEDEAPGRARVPGVMERLNKLDGELSNNGGSTTKDKVDKLYKNQAILMDAFVEMGERLISIENCLTNKPQEPSN*
JGI26470J50227_10004705F008023AGGAGVANTPTSPLDATGRAAEAAAKKNAKALQDRKDEISIAAQIEAESLENDVFDPKKPDAPLVLDEIENVGVSTANQRVIIRTITDIEEMTFGVGNHYSFKAGVKYSVSPELADYLEQLGYIWRPN*
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