| Basic Information | |
|---|---|
| Taxon OID | 3300003375 Open in IMG/M |
| Scaffold ID | JGI26470J50227_1000110 Open in IMG/M |
| Source Dataset Name | Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37886 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (86.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog Lake, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0409 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006979 | Metagenome / Metatranscriptome | 360 | Y |
| F008806 | Metagenome | 327 | Y |
| F009327 | Metagenome / Metatranscriptome | 319 | Y |
| F010448 | Metagenome / Metatranscriptome | 303 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI26470J50227_100011010 | F010448 | GAG | VKGGDISNVSSPQVIATTTLVVSLKEVEERKLLSRKVTHVLGEINMLAANKLWLLSNEYGLSLELAGFADQGWTEELLDKAFERLERRVVNPFNYWELYEDVDELVGMLPYRPNLKAVIDVPGQVARYGSAGVELDNI* |
| JGI26470J50227_100011030 | F008806 | GGA | MTFLLSEDKALRDLLKGMTVTDQKSDASGTATRNVGVYFGQPDQEVRQQAYPYITIDMIDISEDIQRSMRGLVKPVYMADPNTMPDGSSYDSATNDWYIHWPIPVNIDYQITTYARQPRHDRELLAQIMYNKIPLRFAVLEVDDNTSQGTIRRIDVLDIAKRDVTEQGKRLFVNSFTVRVSSEIAPELYKSAYKALEVVVTGTEGTFVQGQTQPPFTAVDSFTITR* |
| JGI26470J50227_100011038 | F006979 | AGG | MAKTIKIKGEGHTIKKNKKGDVIVDHAGNKGKYDKIDLTKKTKGKVKTIDQGVKATKDWHKKNG* |
| JGI26470J50227_100011042 | F009327 | GGA | MRGTQVQGRFKVEFEHQSIDEGIVDELRAPVGTTVNWYVWDQDYFTNNPDIVLDDIYDVSNQTVGQGRRWKDPFEMPVVMAQLLRSTNIMNERGFYVTDTLRLVIPVVDVQRLLPSMVGNPSNHIKDRIEFQGEIFIPTRVLTRGRYADNYAVFTIDCNQVNSEEMVNDVQFQSFVQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |