NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0004534J46558_1028577

Scaffold Ga0004534J46558_1028577


Overview

Basic Information
Taxon OID3300003306 Open in IMG/M
Scaffold IDGa0004534J46558_1028577 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 1 RNA1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1521
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F066897Metagenome / Metatranscriptome126Y
F103496Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0004534J46558_10285772F022008AGGAMTMTEIEALREALSDLSKQLQTLSDESRTSFGRIYDRLTKIETQMSEREHQFEKYERTLHNHETRIRLVEGELGTLRDVPERLWRVSMSISKLTGMVAAAGGVGGLVATIIVKMLGE*
Ga0004534J46558_10285773F103496AGGMPIEDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTAGRKVNS*
Ga0004534J46558_10285774F066897GGAGGMSSKWFWLILIAIILVSSVFLWHNHTSTQEALIKAQETIKETKQALRESQDALQRIDEITQKLQDVTRMAKEAGDKRVEEIKYISDDDFLGIVNEYSALMVERVE*
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