| Basic Information | |
|---|---|
| Taxon OID | 3300003306 Open in IMG/M |
| Scaffold ID | Ga0004534J46558_1003724 Open in IMG/M |
| Source Dataset Name | Biogas fermentation microbial communities from Germany - Plant 1 RNA1 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1683 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Bielefeld, North Rhine-Westphalia, Germany | |||||||
| Coordinates | Lat. (o) | 52.0385 | Long. (o) | 8.4956 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009968 | Metagenome / Metatranscriptome | 310 | Y |
| F022442 | Metagenome / Metatranscriptome | 214 | Y |
| F051949 | Metagenome / Metatranscriptome | 143 | N |
| F053364 | Metagenome / Metatranscriptome | 141 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0004534J46558_10037241 | F051949 | GGAGG | MFAHAGTARLDIFTDSLLLEVGEDLFLAPLDKLSALMQCRASFCQLSRRYLGTGGHYCDVEQGIGLRRSKPGAALIFVERGTIYSIPVVELREVLHGVRSECGISRVLTTEARMKEVEA* |
| Ga0004534J46558_10037243 | F009968 | AGG | MNTCLGCRSHYRERHWWIFEIDFCGLTGDVVGFECPIGCIDSEGCPAYERRPAWPEGAIA |
| Ga0004534J46558_10037244 | F053364 | AGGGGG | VSDPLNDILVECCKLRGCYPLMHRTLHEFNWFCNCAISGAGPFIDIEIATAEADGDEALAGVLKDRRNEENGIRDRFGERYSYGSDELIRFAEAFRIYCREQYGDEEVGA* |
| Ga0004534J46558_10037245 | F022442 | AGGAGG | VTFRPAGEARLDLYTDAMLLDIGPDTFVVPLARLADLTAHRLREVVVSRRYWGDAPGTFCDVEQGIWLRRSQTGQSLMMIVQGCVYSIPVYLILEVKDGIREACTISMLVTDARQLDDAHSRQTVL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |