NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10100865

Scaffold JGI25908J49247_10100865


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10100865 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001538Metagenome / Metatranscriptome674Y
F026856Metagenome196Y
F092031Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_101008651F092031GGAMVTKKPPAKVAPVKRRSPKTEQTINVSVAAPTKSEPKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLSFAGYFAWDSRQV
JGI25908J49247_101008652F001538GGAVIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQVQLQDLAFAIYTKKAAQERLRMEIFQNRKLDIYA*
JGI25908J49247_101008653F026856N/AKHKSLCKSSDMTVIWNNLSEWAGSADSAELRHKVVIAYKDALSREKK*
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