NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26339J46600_10001853

Scaffold JGI26339J46600_10001853


Overview

Basic Information
Taxon OID3300003218 Open in IMG/M
Scaffold IDJGI26339J46600_10001853 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6548
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014825Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
JGI26339J46600_100018532F014825GGAGGMAGNKLTIKLTDDQQHQIKTATGKSIKELNIDLAATGHLTDKDLADVAGGSGRVILKDTIPP*
JGI26339J46600_100018533F014825AGGAGMAGTKLTIKLTDDQQNQIRNATGRKITELNIDAAAISHLTEKELDQVAGGAGEIVITKDPG*
JGI26339J46600_100018534F014825AGGAGGMAGSKLTIKLTDDQQKQIKNATGRSIKELSIDLSVVEQLADQDLAKASGGIHHEGM*
JGI26339J46600_100018535F014825AGGAGGMAGNKVTIRLTDDQQSQIKNARGRSITELNIDVAATGQLSDKDLDQAAGGVIIEFGKI*
JGI26339J46600_100018537F014825AGTAGGMAGNKLTVKLADDQQNQIKTATGKSIKELNIDLAATDHLSEIEFDNVSGGINFIKADKG*
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